Index

A

aaggregate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) abbr (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) absolute() (lamindb.UPath method) abulk_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) abulk_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) access_token (lamindb.setup.core.UserSettings attribute) acontains() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) acount() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) acreate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) add() (lamindb.models.LabelManager method) (lamindb.models.SchemaOptionals method) add_feature_set() (lamindb.models.FeatureManager method) add_from() (lamindb.models.LabelManager method) add_new() (lamindb.curators.core.CatVector method) add_new_from() (lamindb.curators.core.DataFrameCatManager method) add_schema() (lamindb.models.FeatureManager method) add_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) add_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Person method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) add_values() (lamindb.models.FeatureManager method) administered_datetime (clinicore.Treatment attribute) aearliest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aexists() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aexplain() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) afirst() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) age (clinicore.Patient attribute) (wetlab.Donor attribute) aget() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aget_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aggregate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ain_bulk() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method)

aiterator() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alast() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alatest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alias() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) all() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) anchor (lamindb.UPath property) anndata_ensembl_gene_ids_and_valid_features_in_obs() (in module lamindb.examples.schemas) anndata_file_pbmc68k_test() (in module lamindb.core.datasets) anndata_human_immune_cells() (in module lamindb.core.datasets) anndata_mouse_sc_lymph_node() (in module lamindb.core.datasets) anndata_pbmc3k_processed() (in module lamindb.core.datasets) anndata_pbmc68k_reduced() (in module lamindb.core.datasets) anndata_suo22_Visium10X() (in module lamindb.core.datasets) anndata_with_obs() (in module lamindb.core.datasets) AnnDataAccessor (class in lamindb.core.storage) AnnDataCurator (class in lamindb.curators) annotate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) annotation (lamindb.core.Settings property) AnnotationSettings (class in lamindb.core.subsettings) api_key (lamindb.setup.core.UserSettings attribute) append() (lamindb.Collection method) (lamindb.models.SQLRecordList method) args (lamindb.errors.DoesNotExist attribute) (lamindb.errors.IntegrityError attribute) (lamindb.errors.InvalidArgument attribute) (lamindb.errors.MissingContextUID attribute) (lamindb.errors.NotebookNotSaved attribute) (lamindb.errors.SQLRecordNameChangeIntegrityError attribute) (lamindb.errors.UpdateContext attribute) (lamindb.errors.ValidationError attribute) array_rank (lamindb.Feature attribute) array_shape (lamindb.Feature attribute) array_size (lamindb.Feature attribute) artifact Artifact (class in lamindb) artifact_silence_missing_run_warning (lamindb.core.subsettings.CreationSettings attribute) artifact_skip_size_hash (lamindb.core.subsettings.CreationSettings attribute) ArtifactKind (in module lamindb.base.types) artifacts (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Collection attribute) (lamindb.models.FeatureValue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ArtifactSet (class in lamindb.models) as_manager() (lamindb.models.BasicQuerySet class method) (lamindb.models.QuerySet class method) as_posix() (lamindb.UPath method) as_uri() (lamindb.UPath method) aupdate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aupdate_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) authors (lamindb.Reference attribute) auto_connect (lamindb.setup.core.SetupSettings property) auto_created (lamindb.models.QueryManager attribute) auto_creation_counter (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute)

B

BackedAccessor (class in lamindb.core.storage) base26() (in module lamindb.base.uids) base62() (in module lamindb.base.uids) base62_12() (in module lamindb.base.uids) base62_16() (in module lamindb.base.uids) base62_20() (in module lamindb.base.uids) base62_8() (in module lamindb.base.uids) base64() (in module lamindb.base.uids) BaseSQLRecord (class in lamindb.models) BasicQuerySet (class in lamindb.models) batch (clinicore.Biosample attribute) (wetlab.Biosample attribute) (wetlab.Donor attribute) (wetlab.Techsample attribute) BFXPipeline (class in bionty.base) BigIntegerField (class in lamindb.base.fields) BinaryField (class in lamindb.base.fields) Biologic (class in wetlab) BiologicType (in module wetlab) bionty module bionty.base module bionty.core module BioRecord (class in bionty.core) BioSample (class in bionty.base) Biosample (class in clinicore) (class in wetlab) biosamples (wetlab.Techsample attribute) biotype (bionty.Gene attribute) birth_date (clinicore.Patient attribute) bmi (wetlab.Donor attribute) BooleanField (class in lamindb.base.fields) branch (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute)

Branch (class in lamindb) branch (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.SQLRecord attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Sheet attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) bulk_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) bulk_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method)

C

cache() (lamindb.Artifact method) (lamindb.Collection method) cache_dir (lamindb.core.Settings property) (lamindb.setup.core.SetupSettings property) (lamindb.setup.core.StorageSettings property) CanCurate (class in lamindb.models) cast_db_type() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) cat (lamindb.curators.DataFrameCurator property) categoricals (lamindb.curators.core.DataFrameCatManager property) CatLookup (class in lamindb.curators.core) CatVector (class in lamindb.curators.core) cell_lines (wetlab.Biosample attribute) cell_types (clinicore.Biosample attribute) (wetlab.Biosample attribute) CellLine (class in bionty) (class in bionty.base) CellMarker (class in bionty) (class in bionty.base) CellType (class in bionty) (class in bionty.base) CharField (class in lamindb.base.fields) check() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) (lamindb.models.QueryManager method) check_vars_non_aligned() (lamindb.core.MappedCollection method) check_vars_sorted() (lamindb.core.MappedCollection method) chembl_id (clinicore.Medication attribute) (wetlab.Compound attribute) children (lamindb.Project attribute) (lamindb.ULabel attribute) chmod() (lamindb.UPath method) choices (lamindb.base.fields.BigIntegerField property) (lamindb.base.fields.BinaryField property) (lamindb.base.fields.BooleanField property) (lamindb.base.fields.CharField property) (lamindb.base.fields.DateField property) (lamindb.base.fields.DateTimeField property) (lamindb.base.fields.DecimalField property) (lamindb.base.fields.DurationField property) (lamindb.base.fields.EmailField property) (lamindb.base.fields.FloatField property) (lamindb.base.fields.ForeignKey property) (lamindb.base.fields.GenericIPAddressField property) (lamindb.base.fields.IntegerField property) (lamindb.base.fields.JSONField property) (lamindb.base.fields.OneToOneField property) (lamindb.base.fields.PositiveIntegerField property) (lamindb.base.fields.PositiveSmallIntegerField property) (lamindb.base.fields.SlugField property) (lamindb.base.fields.SmallIntegerField property) (lamindb.base.fields.TextField property) (lamindb.base.fields.TimeField property) (lamindb.base.fields.URLField property) (lamindb.base.fields.UUIDField property) class_lookups (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) clear() (lamindb.models.SQLRecordList method) clinical_trial (clinicore.Biosample attribute) ClinicalTrial (class in clinicore) clinicore module clone() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) close() (lamindb.core.MappedCollection method) (lamindb.core.storage.AnnDataAccessor method) closed (lamindb.core.MappedCollection property) (lamindb.core.storage.AnnDataAccessor property) cloud_to_local() (lamindb.setup.core.StorageSettings method) cloud_to_local_no_update() (lamindb.setup.core.StorageSettings method) code (lamindb.errors.MissingContextUID attribute) (lamindb.errors.UpdateContext attribute) coerce_dtype (lamindb.Feature property) (lamindb.Schema property) Collection (class in lamindb) collections (clinicore.ClinicalTrial attribute) (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) column (wetlab.Well attribute) CombinationPerturbation (class in wetlab) complex_filter() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) components (lamindb.Record attribute) (lamindb.Schema attribute) COMPOSITE (lamindb.core.storage.VALID_SUFFIXES attribute) composites (lamindb.Record attribute) (lamindb.Schema attribute) Compound (class in wetlab) compound (wetlab.CompoundPerturbation attribute) compound_perturbations (wetlab.CombinationPerturbation attribute)

CompoundPerturbation (class in wetlab) concentration (wetlab.CompoundPerturbation attribute) concentration_unit (wetlab.CompoundPerturbation attribute) connect() (in module lamindb) contains() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) Context (class in lamindb.core) context (in module lamindb) contribute_to_class() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) (lamindb.models.QueryManager method) contribute_to_related_class() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) convert_empty_strings() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) copy() (lamindb.models.SQLRecordList method) count() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.setup.migrate class method) created_artifacts (lamindb.User attribute) created_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Sheet attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.TracksRun attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Sheet attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by_id (lamindb.models.TracksRun attribute) created_runs (lamindb.User attribute) created_transforms (lamindb.User attribute) creation (lamindb.core.Settings property) creation_counter (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) (lamindb.models.QueryManager attribute) CreationSettings (class in lamindb.core.subsettings) curator Curator (class in lamindb.curators.core) (in module lamindb) currently_used (bionty.Source attribute) cwd() (lamindb.UPath class method)

D

data_artifact (lamindb.Collection property) dataframe_artifact (bionty.Source attribute) DataFrameCatManager (class in lamindb.curators.core) DataFrameCurator (class in lamindb.curators) date (lamindb.Reference attribute) (wetlab.Experiment attribute) DateField (class in lamindb.base.fields) dates() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) DateTimeField (class in lamindb.base.fields) datetimes() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) db (lamindb.models.BasicQuerySet property) (lamindb.models.QueryManager property) (lamindb.models.QuerySet property) (lamindb.setup.core.InstanceSettings property) db_check() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) db_manager() (lamindb.models.QueryManager method) db_parameters() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) db_returning (lamindb.base.fields.BigIntegerField property) (lamindb.base.fields.BinaryField property) (lamindb.base.fields.BooleanField property) (lamindb.base.fields.CharField property) (lamindb.base.fields.DateField property) (lamindb.base.fields.DateTimeField property) (lamindb.base.fields.DecimalField property) (lamindb.base.fields.DurationField property) (lamindb.base.fields.EmailField property) (lamindb.base.fields.FloatField property) (lamindb.base.fields.ForeignKey property) (lamindb.base.fields.GenericIPAddressField property) (lamindb.base.fields.IntegerField property) (lamindb.base.fields.JSONField property) (lamindb.base.fields.OneToOneField property) (lamindb.base.fields.PositiveIntegerField property) (lamindb.base.fields.PositiveSmallIntegerField property) (lamindb.base.fields.SlugField property) (lamindb.base.fields.SmallIntegerField property) (lamindb.base.fields.TextField property) (lamindb.base.fields.TimeField property) (lamindb.base.fields.URLField property) (lamindb.base.fields.UUIDField property) db_tablespace (lamindb.base.fields.BigIntegerField property) (lamindb.base.fields.BinaryField property) (lamindb.base.fields.BooleanField property) (lamindb.base.fields.CharField property) (lamindb.base.fields.DateField property) (lamindb.base.fields.DateTimeField property) (lamindb.base.fields.DecimalField property) (lamindb.base.fields.DurationField property) (lamindb.base.fields.EmailField property) (lamindb.base.fields.FloatField property) (lamindb.base.fields.ForeignKey property) (lamindb.base.fields.GenericIPAddressField property) (lamindb.base.fields.IntegerField property) (lamindb.base.fields.JSONField property) (lamindb.base.fields.OneToOneField property) (lamindb.base.fields.PositiveIntegerField property) (lamindb.base.fields.PositiveSmallIntegerField property) (lamindb.base.fields.SlugField property) (lamindb.base.fields.SmallIntegerField property) (lamindb.base.fields.TextField property) (lamindb.base.fields.TimeField property) (lamindb.base.fields.URLField property) (lamindb.base.fields.UUIDField property) db_type() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) db_type_parameters() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) db_type_suffix() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) deceased (clinicore.Patient attribute) deceased_date (clinicore.Patient attribute) DecimalField (class in lamindb.base.fields) deconstruct() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) (lamindb.models.QueryManager method) default_error_messages (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) default_validators (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) default_value (lamindb.Feature property) defer() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) define_features_labels() (in module lamindb.core.datasets.mini_immuno) defined_migrations() (lamindb.setup.migrate class method) delete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (in module lamindb.setup) (lamindb.Artifact method) (lamindb.Branch method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.BaseSQLRecord method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue method) (lamindb.models.IsVersioned method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecord method) (lamindb.models.TracksRun method) (lamindb.models.TracksUpdates method) (lamindb.Person method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Sheet method) (lamindb.Space method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method)

delete_cached_value() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) deploy() (lamindb.setup.migrate class method) deployed_migrations() (lamindb.setup.migrate class method) deprecated() (in module lamindb.base) describe() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.FeatureManager method) (lamindb.models.LabelManager method) (lamindb.Schema method) description (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (lamindb.Artifact attribute) (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField property) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Sheet attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) descriptor_class (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) DevelopmentalStage (class in bionty) (class in bionty.base) df (lamindb.models.InspectResult property) df() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.models.SQLRecordList method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Sheet class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) df_iris() (in module lamindb.core.datasets) df_iris_in_meter() (in module lamindb.core.datasets) df_iris_in_meter_study1() (in module lamindb.core.datasets) df_iris_in_meter_study2() (in module lamindb.core.datasets) dialect (lamindb.setup.core.InstanceSettings property) diff() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) difference() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) dir_iris_images() (in module lamindb.core.datasets) dir_scrnaseq_cellranger() (in module lamindb.core.datasets) disconnect() (in module lamindb.setup) Disease (class in bionty) (class in bionty.base) diseases (clinicore.Biosample attribute) (wetlab.Biosample attribute) (wetlab.Donor attribute) display_available_sources() (in module bionty.base) display_currently_used_sources() (in module bionty.base) distinct() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) django() (in module lamindb.setup) do_related_class() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) doc_args() (in module lamindb.base) DoesNotExist doi (lamindb.Reference attribute) Donor (class in wetlab) dosage (clinicore.Treatment attribute) dosage_unit (clinicore.Treatment attribute) download_to() (lamindb.UPath method) drive (lamindb.UPath property) Drug (class in bionty.base) Dtype (in module lamindb.base.types) dtype (lamindb.Feature attribute) (lamindb.Schema attribute) duration (clinicore.Treatment attribute) (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute) DurationField (class in lamindb.base.fields)

E

earliest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) email (lamindb.Person attribute) (lamindb.setup.core.UserSettings attribute) EmailField (class in lamindb.base.fields) empty_strings_allowed (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) empty_values (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute)

end_date (lamindb.Project attribute) ensembl_gene_id (bionty.Gene attribute) ensembl_gene_ids (bionty.Protein attribute) entity (bionty.Source attribute) environment (lamindb.Run attribute) environmental_perturbations (wetlab.CombinationPerturbation attribute) EnvironmentalPerturbation (class in wetlab) Ethnicity (class in bionty) (class in bionty.base) ethnicity (clinicore.Patient attribute) (wetlab.Donor attribute) exclude() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) exists() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.UPath method) expanduser() (lamindb.UPath method) Experiment (class in wetlab) ExperimentalFactor (class in bionty) (class in bionty.base) explain() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) extend() (lamindb.models.SQLRecordList method) external (lamindb.Person attribute) extra() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method)

F

FAIR fake_bio_notebook_titles() (in module lamindb.core.datasets) feature Feature (class in lamindb) feature (lamindb.models.FeatureValue attribute) feature_sets (lamindb.Artifact attribute) FeatureManager (class in lamindb.models) features (lamindb.Artifact attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Run attribute) (lamindb.Schema attribute) FeatureSet (in module lamindb) FeatureValue (class in lamindb.models) FieldAttr (in module lamindb.base.types) fields (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) file_bam() (in module lamindb.core.datasets) file_fastq() (in module lamindb.core.datasets) file_fcs() (in module lamindb.core.datasets) file_fcs_alpert19() (in module lamindb.core.datasets) file_jpg_paradisi05() (in module lamindb.core.datasets) file_mini_csv() (in module lamindb.core.datasets) file_tiff_suo22() (in module lamindb.core.datasets) file_tsv_rnaseq_nfcore_salmon_merged_gene_counts() (in module lamindb.core.datasets) filter() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureManager class method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Sheet class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) finish() (in module lamindb) (lamindb.core.Context method) finished_at (lamindb.Run attribute) first() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) flatchoices (lamindb.base.fields.BigIntegerField property) (lamindb.base.fields.BinaryField property) (lamindb.base.fields.BooleanField property) (lamindb.base.fields.CharField property) (lamindb.base.fields.DateField property) (lamindb.base.fields.DateTimeField property) (lamindb.base.fields.DecimalField property) (lamindb.base.fields.DurationField property) (lamindb.base.fields.EmailField property) (lamindb.base.fields.FloatField property) (lamindb.base.fields.ForeignKey property) (lamindb.base.fields.GenericIPAddressField property) (lamindb.base.fields.IntegerField property) (lamindb.base.fields.JSONField property) (lamindb.base.fields.OneToOneField property) (lamindb.base.fields.PositiveIntegerField property) (lamindb.base.fields.PositiveSmallIntegerField property) (lamindb.base.fields.SlugField property) (lamindb.base.fields.SmallIntegerField property) (lamindb.base.fields.TextField property) (lamindb.base.fields.TimeField property) (lamindb.base.fields.URLField property) (lamindb.base.fields.UUIDField property)

flexible (lamindb.Schema property) FloatField (class in lamindb.base.fields) ForeignKey (class in lamindb.base.fields) formfield() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) forward_related_accessor_class (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.OneToOneField attribute) frac_validated (lamindb.models.InspectResult property) from_anndata() (lamindb.Artifact class method) from_db_value() (lamindb.base.fields.JSONField method) from_df() (lamindb.Artifact class method) (lamindb.Feature class method) (lamindb.Schema class method) from_dir() (lamindb.Artifact class method) from_mudata() (lamindb.Artifact class method) from_queryset() (lamindb.models.QueryManager class method) from_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) from_spatialdata() (lamindb.Artifact class method) from_tiledbsoma() (lamindb.Artifact class method) from_values() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Feature class method) (lamindb.models.CanCurate class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) fs (lamindb.UPath property)

G

gender (clinicore.Patient attribute) GENDER_CHOICES (clinicore.Patient attribute) Gene (class in bionty) (class in bionty.base) gene_symbol (bionty.CellMarker attribute) (bionty.Protein attribute) generated (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) GenericIPAddressField (class in lamindb.base.fields) genes (bionty.Pathway attribute) (wetlab.PerturbationTarget attribute) genetic_perturbations (wetlab.CombinationPerturbation attribute) GeneticPerturbation (class in wetlab) GeneticPerturbationSystem (in module wetlab) get() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureManager class method) (lamindb.models.FeatureValue class method) (lamindb.models.LabelManager method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SchemaOptionals method) (lamindb.models.SQLRecord class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Sheet class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) get_attname() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_attname_column() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_cache_name() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_cached_value() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_choices() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_class_lookups() (lamindb.base.fields.BigIntegerField class method) (lamindb.base.fields.BinaryField class method) (lamindb.base.fields.BooleanField class method) (lamindb.base.fields.CharField class method) (lamindb.base.fields.DateField class method) (lamindb.base.fields.DateTimeField class method) (lamindb.base.fields.DecimalField class method) (lamindb.base.fields.DurationField class method) (lamindb.base.fields.EmailField class method) (lamindb.base.fields.FloatField class method) (lamindb.base.fields.ForeignKey class method) (lamindb.base.fields.GenericIPAddressField class method) (lamindb.base.fields.IntegerField class method) (lamindb.base.fields.JSONField class method) (lamindb.base.fields.OneToOneField class method) (lamindb.base.fields.PositiveIntegerField class method) (lamindb.base.fields.PositiveSmallIntegerField class method) (lamindb.base.fields.SlugField class method) (lamindb.base.fields.SmallIntegerField class method) (lamindb.base.fields.TextField class method) (lamindb.base.fields.TimeField class method) (lamindb.base.fields.URLField class method) (lamindb.base.fields.UUIDField class method) get_col() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_dataset1() (in module lamindb.core.datasets.mini_immuno) get_dataset2() (in module lamindb.core.datasets.mini_immuno) get_db_converters() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_db_prep_save() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_db_prep_value() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method)

get_default() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_extra_descriptor_filter() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_extra_restriction() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_filter_kwargs_for_object() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_foreign_related_value() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_forward_related_filter() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_gender_display() (clinicore.Patient method) get_instance_lookups() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_internal_type() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_joining_columns() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_joining_fields() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_label_weights() (lamindb.core.MappedCollection method) get_limit_choices_to() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_local_related_value() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_lookup() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_lookups (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) get_merged_categories() (lamindb.core.MappedCollection method) get_merged_labels() (lamindb.core.MappedCollection method) get_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) get_path_info() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_pk_value_on_save() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_placeholder() (lamindb.base.fields.BinaryField method) get_prep_value() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_queryset() (lamindb.models.QueryManager method) get_reverse_joining_columns() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_reverse_joining_fields() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_reverse_path_info() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_reverse_related_filter() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) get_status_display() (clinicore.Treatment method) get_transform() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) get_uids() (lamindb.models.SchemaOptionals method) get_values() (lamindb.models.FeatureManager method) git_repo (lamindb.setup.core.InstanceSettings property) glob() (lamindb.UPath method) group() (lamindb.UPath method)

H

handle (lamindb.setup.core.UserSettings attribute) (lamindb.User attribute) hardlink_to() (lamindb.UPath method) has_default() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) hash (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.models.FeatureValue attribute) (lamindb.Schema attribute) (lamindb.Transform attribute)

HasParents (class in lamindb.models) hidden (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) home() (lamindb.UPath class method)

I

id (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings property) import_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) in_bulk() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) in_db (bionty.Source attribute) index (lamindb.Schema property) index() (lamindb.models.SQLRecordList method) ingest_mini_immuno_datasets() (in module lamindb.examples) init() (in module lamindb.setup) initiated_by_run (lamindb.Run attribute) initiated_runs (lamindb.Run attribute) input_artifacts (lamindb.Run attribute) input_collections (lamindb.Run attribute) input_of_runs (lamindb.Artifact attribute) (lamindb.Collection attribute) insert() (lamindb.models.SQLRecordList method) inspect() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate class method) (lamindb.models.QuerySet method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method)

InspectResult (class in lamindb.models) instance (lamindb.setup.core.SetupSettings property) instance_uid (lamindb.Storage attribute) InstanceSettings (class in lamindb.setup.core) instrument (bionty.ExperimentalFactor attribute) integer_field_class (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) IntegerField (class in lamindb.base.fields) IntegrityError intersection() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) InvalidArgument is_absolute() (lamindb.UPath method) is_block_device() (lamindb.UPath method) is_cached() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) is_char_device() (lamindb.UPath method) is_dir() (lamindb.UPath method) is_fifo() (lamindb.UPath method) is_file() (lamindb.UPath method) is_junction() (lamindb.UPath method) is_latest (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) is_mount() (lamindb.UPath method) is_on_hub (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) is_relative_to() (lamindb.UPath method) is_remote (lamindb.setup.core.InstanceSettings property) is_reserved() (lamindb.UPath method) is_socket() (lamindb.UPath method) is_symlink() (lamindb.UPath method) is_type (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.ULabel attribute) is_validated (lamindb.curators.core.CatVector property) IsVersioned (class in lamindb.models) iterator() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) iterdir() (lamindb.UPath method) itype (lamindb.Schema attribute)

J

joinpath() (lamindb.UPath method)

joinuri() (lamindb.UPath method) JSONField (class in lamindb.base.fields)

K

keep_artifacts_local (lamindb.setup.core.InstanceSettings property) key (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute)

key_to_filepath() (lamindb.setup.core.StorageSettings method) kind (lamindb.Artifact attribute)

L

label LabelManager (class in lamindb.models) labels (lamindb.Artifact property) lakehouse lamindb module lamindb.base module lamindb.base.fields module lamindb.base.types module lamindb.base.uids module lamindb.core module lamindb.core.datasets module lamindb.core.datasets.mini_immuno module lamindb.core.loaders module lamindb.core.storage module lamindb.core.subsettings module lamindb.curators module lamindb.curators.core module lamindb.errors module lamindb.examples module lamindb.examples.schemas module lamindb.integrations module lamindb.models module lamindb.setup module lamindb.setup.core module last() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) latest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) latest_run (lamindb.Transform property) latest_version() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) lchmod() (lamindb.UPath method) length (bionty.Protein attribute) list() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) ListLike (in module lamindb.base.types) load() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.ArtifactSet method) load_fcs() (in module lamindb.core.loaders) load_h5ad() (in module lamindb.core.loaders) load_h5mu() (in module lamindb.core.loaders) load_html() (in module lamindb.core.loaders) load_image() (in module lamindb.core.loaders) load_json() (in module lamindb.core.loaders) load_svg() (in module lamindb.core.loaders) load_tsv() (in module lamindb.core.loaders) local_filepath() (lamindb.setup.core.StorageSettings method) logger (in module lamindb.core) login() (in module lamindb.setup) logout() (in module lamindb.setup)

lookup() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Sheet class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) lstat() (lamindb.UPath method)

M

make_external() (lamindb.models.FeatureManager method) (lamindb.models.LabelManager method) many_to_many (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) many_to_one (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) map_legacy_ids() (bionty.base.Gene method) mapped() (lamindb.Collection method) (lamindb.models.ArtifactSet method)

MappedCollection (class in lamindb.core) match() (lamindb.UPath method) MAX_BIGINT (lamindb.base.fields.BigIntegerField attribute) maximal_set (lamindb.Schema attribute) md5 (bionty.Source attribute) measurement (bionty.ExperimentalFactor attribute) Medication (class in clinicore) medication (clinicore.Treatment attribute) medications (clinicore.Biosample attribute) members (lamindb.Schema property) (wetlab.CombinationPerturbation property) Meta (lamindb.models.IsVersioned attribute) (lamindb.models.TracksRun attribute) (lamindb.models.TracksUpdates attribute) meta_artifact (lamindb.Collection attribute) migrate (class in lamindb.setup) minimal_set (lamindb.Schema attribute) MissingContextUID mkdir() (lamindb.UPath method) modified (lamindb.UPath property) module bionty bionty.base bionty.core clinicore lamindb lamindb.base lamindb.base.fields lamindb.base.types lamindb.base.uids lamindb.core lamindb.core.datasets lamindb.core.datasets.mini_immuno lamindb.core.loaders lamindb.core.storage lamindb.core.subsettings lamindb.curators lamindb.curators.core lamindb.errors lamindb.examples lamindb.examples.schemas lamindb.integrations lamindb.models lamindb.setup lamindb.setup.core wetlab modules (lamindb.setup.core.InstanceSettings property) molecule (bionty.ExperimentalFactor attribute) mudata_papalexi21_subset() (in module lamindb.core.datasets) MuDataCurator (class in lamindb.curators)

N

n (lamindb.Schema attribute) n_empty (lamindb.models.InspectResult property) n_files (lamindb.Artifact attribute) n_max_records (lamindb.core.subsettings.AnnotationSettings attribute) n_observations (lamindb.Artifact attribute) n_unique (lamindb.models.InspectResult property) name (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Branch attribute) (lamindb.Collection property) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Sheet attribute) (lamindb.Space attribute) (lamindb.Transform property) (lamindb.ULabel attribute) (lamindb.UPath property) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute)

ncbi_gene_id (bionty.CellMarker attribute) ncbi_gene_ids (bionty.Gene attribute) non_db_attrs (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) non_validated (lamindb.curators.core.DataFrameCatManager property) (lamindb.models.InspectResult property) none() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) NotebookNotSaved nullable (lamindb.Feature property)

O

objective (clinicore.ClinicalTrial attribute) obs_names (lamindb.core.storage.AnnDataAccessor property) observation off_target_score (wetlab.GeneticPerturbation attribute) on_target_score (wetlab.GeneticPerturbation attribute) one() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) one_or_none() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) one_to_many (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) one_to_one (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) OneToOneField (class in lamindb.base.fields) only() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method)

ontology_id (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.EnvironmentalPerturbation attribute) open() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.ArtifactSet method) (lamindb.UPath method) optionals (lamindb.Schema property) order_by() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ordered (lamindb.models.BasicQuerySet property) (lamindb.models.QuerySet property) ordered_artifacts (lamindb.Collection property) ordered_set (lamindb.Schema attribute) organism (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellMarker attribute) (bionty.core.Settings property) (bionty.core.StaticReference property) (bionty.Gene attribute) (bionty.Protein attribute) (bionty.Source attribute) Organism (class in bionty) (class in bionty.base) organism (wetlab.Biosample attribute) (wetlab.Donor attribute) original_shapes (lamindb.core.MappedCollection property) ORM otype (lamindb.Artifact attribute) (lamindb.Schema attribute) output_artifacts (lamindb.Run attribute) output_collections (lamindb.Run attribute) owner (lamindb.setup.core.InstanceSettings property) owner() (lamindb.UPath method)

P

Param (in module lamindb) parent (lamindb.UPath property) parents (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Project attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (wetlab.Compound attribute) parts (lamindb.UPath property) password (lamindb.setup.core.UserSettings attribute) path (lamindb.Artifact property) (lamindb.Storage property) (lamindb.UPath property) paths (lamindb.setup.core.SetupSettings property) Pathway (class in bionty) (class in bionty.base) pathways (wetlab.PerturbationTarget attribute) Patient (class in clinicore) patient (clinicore.Biosample attribute) people (lamindb.Project attribute) Person (class in lamindb) PerturbationTarget (class in wetlab) Phenotype (class in bionty) (class in bionty.base) pk (lamindb.models.IsVersioned property) (lamindb.models.TracksRun property) (lamindb.models.TracksUpdates property) pop() (lamindb.models.SQLRecordList method) PositiveIntegerField (class in lamindb.base.fields) PositiveSmallIntegerField (class in lamindb.base.fields) pre_save() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method)

predecessors (lamindb.Project attribute) (lamindb.Transform attribute) prefetch_related() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) private_django_api (lamindb.setup.core.SetupSettings property) Project (class in lamindb) project (lamindb.core.Context property) projects (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Sheet attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) Protein (class in bionty) (class in bionty.base) proteins (wetlab.Biologic attribute) (wetlab.PerturbationTarget attribute) protocol (lamindb.UPath property) proxy_dtype (lamindb.Feature attribute) public() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) PublicOntology (class in bionty.base) PublicOntologyField (class in bionty.base) pubmed_id (lamindb.Reference attribute)

Q

query (lamindb.models.BasicQuerySet property) (lamindb.models.QuerySet property) query_children() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.models.HasParents method) (lamindb.ULabel method) (wetlab.Compound method)

query_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.models.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) QueryManager (class in lamindb.models) QuerySet (class in lamindb.models)

R

raw() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) read_bytes() (lamindb.UPath method) read_text() (lamindb.UPath method) readlink() (lamindb.UPath method) record Record (class in lamindb) record (lamindb.setup.core.StorageSettings property) records (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Sheet attribute) Reference (class in lamindb) reference (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) reference_type (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) references (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Transform attribute) region (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) register_class_lookup() (lamindb.base.fields.BigIntegerField class method) (lamindb.base.fields.BinaryField class method) (lamindb.base.fields.BooleanField class method) (lamindb.base.fields.CharField class method) (lamindb.base.fields.DateField class method) (lamindb.base.fields.DateTimeField class method) (lamindb.base.fields.DecimalField class method) (lamindb.base.fields.DurationField class method) (lamindb.base.fields.EmailField class method) (lamindb.base.fields.FloatField class method) (lamindb.base.fields.ForeignKey class method) (lamindb.base.fields.GenericIPAddressField class method) (lamindb.base.fields.IntegerField class method) (lamindb.base.fields.JSONField class method) (lamindb.base.fields.OneToOneField class method) (lamindb.base.fields.PositiveIntegerField class method) (lamindb.base.fields.PositiveSmallIntegerField class method) (lamindb.base.fields.SlugField class method) (lamindb.base.fields.SmallIntegerField class method) (lamindb.base.fields.TextField class method) (lamindb.base.fields.TimeField class method) (lamindb.base.fields.URLField class method) (lamindb.base.fields.UUIDField class method) register_instance_lookup() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) register_lookup (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) register_source_in_lamindb() (bionty.base.Gene method) registry Registry (class in lamindb.models) rel_class (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.OneToOneField attribute) rel_db_type() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) related_accessor_class (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.OneToOneField attribute) related_model (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute)

related_query_name() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) relative_to() (lamindb.UPath method) remove() (lamindb.models.SchemaOptionals method) (lamindb.models.SQLRecordList method) remove_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Person method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) remove_values() (lamindb.models.FeatureManager method) rename() (lamindb.UPath method) replace() (lamindb.Artifact method) (lamindb.UPath method) report (lamindb.Run attribute) requires_unique_target (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.OneToOneField attribute) resolve() (lamindb.UPath method) resolve_expression() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) resolve_related_fields() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) restore() (lamindb.Artifact method) (lamindb.Collection method) reverse() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) rglob() (lamindb.UPath method) rmdir() (lamindb.UPath method) root (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.UPath property) root_as_str (lamindb.setup.core.StorageSettings property) route (clinicore.Treatment attribute) row (wetlab.Well attribute) run (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Run (class in lamindb) run (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.TracksRun attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Sheet attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) run_id (lamindb.models.TracksRun attribute) run_validators() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) runs (lamindb.models.FeatureValue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute)

S

samefile() (lamindb.UPath method) sample save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (in module lamindb) (lamindb.Artifact method) (lamindb.Branch method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.BaseSQLRecord method) (lamindb.models.FeatureValue method) (lamindb.models.IsVersioned method) (lamindb.models.SQLRecord method) (lamindb.models.SQLRecordList method) (lamindb.models.TracksRun method) (lamindb.models.TracksUpdates method) (lamindb.Person method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Sheet method) (lamindb.Space method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) save_artifact() (lamindb.curators.AnnDataCurator method) (lamindb.curators.core.Curator method) (lamindb.curators.core.SlotsCurator method) (lamindb.curators.DataFrameCurator method) (lamindb.curators.MuDataCurator method) (lamindb.curators.SpatialDataCurator method) (lamindb.curators.TiledbsomaExperimentCurator method) save_form_data() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) save_tiledbsoma_experiment() (in module lamindb.integrations) save_vitessce_config() (in module lamindb.integrations) schema Schema (class in lamindb) schema (lamindb.Artifact attribute) (lamindb.Sheet attribute) SchemaOptionals (class in lamindb.models) schemas (bionty.CellMarker attribute) (bionty.Gene attribute) (bionty.Pathway attribute) (bionty.Protein attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Schema attribute) schmidt22_crispra_gws_IFNG() (in module lamindb.core.datasets) schmidt22_perturbseq() (in module lamindb.core.datasets) scientific_name (bionty.Organism attribute) search() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Sheet class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) search_names (lamindb.core.subsettings.CreationSettings attribute) select_for_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) select_format() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) select_related() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) sequence (wetlab.GeneticPerturbation attribute) set() (lamindb.models.SchemaOptionals method) set_abbr() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Person method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) set_attributes_from_name() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) set_attributes_from_rel() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) set_cached_value() (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.OneToOneField method) Settings (class in bionty.core) (class in lamindb.core) settings (in module bionty) (in module bionty.base) (in module lamindb) (in module lamindb.setup) settings_dir (lamindb.setup.core.SetupSettings property) SetupSettings (class in lamindb.setup.core) sex (wetlab.Donor attribute) shape (lamindb.core.MappedCollection property) Sheet (class in lamindb) sheet (lamindb.Record attribute) sheets (lamindb.Project attribute) (lamindb.Schema attribute) show() (lamindb.setup.migrate class method)

SIMPLE (lamindb.core.storage.VALID_SUFFIXES attribute) site (clinicore.Treatment attribute) size (lamindb.Artifact attribute) slice_expression() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) slot (lamindb.Schema attribute) slots (lamindb.curators.AnnDataCurator property) (lamindb.curators.core.SlotsCurator property) (lamindb.curators.MuDataCurator property) (lamindb.curators.SpatialDataCurator property) (lamindb.curators.TiledbsomaExperimentCurator property) (lamindb.models.FeatureManager property) (lamindb.Schema property) SlotsCurator (class in lamindb.curators.core) slug (lamindb.setup.core.InstanceSettings property) SlugField (class in lamindb.base.fields) SmallIntegerField (class in lamindb.base.fields) sort() (lamindb.models.SQLRecordList method) source (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.core.StaticReference property) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) Source (class in bionty) source (clinicore.Medication attribute) (wetlab.Compound attribute) source_code (lamindb.Transform attribute) source_website (bionty.Source attribute) space (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Space (class in lamindb) space (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.SQLRecord attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Sheet attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) SpatialDataCurator (class in lamindb.curators) SQLRecord (class in lamindb.models) SQLRecordList (class in lamindb.models) SQLRecordNameChangeIntegrityError squash() (lamindb.setup.migrate class method) stable_id (bionty.Gene attribute) standardize() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.curators.core.CatVector method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.curators.DataFrameCurator method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate class method) (lamindb.models.QuerySet method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) start_date (lamindb.Project attribute) started_at (lamindb.Run attribute) stat() (lamindb.UPath method) StaticReference (class in bionty.core) status (clinicore.Treatment attribute) STATUS_CHOICES (clinicore.Treatment attribute) stem (lamindb.UPath property) stem_uid (lamindb.Artifact property) (lamindb.Collection property) (lamindb.models.IsVersioned property) (lamindb.Transform property) Storage (class in lamindb) storage (lamindb.Artifact attribute) (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.SetupSettings property) storage_local (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) storage_options (lamindb.UPath property) StorageSettings (class in lamindb.setup.core) StrField (in module lamindb.base.types) successors (lamindb.Project attribute) (lamindb.Transform attribute) suffix (lamindb.Artifact attribute) (lamindb.UPath property) suffixes (lamindb.UPath property) SUPPORTED_SUFFIXES (in module lamindb.core.loaders) swappable_setting (lamindb.base.fields.ForeignKey property) (lamindb.base.fields.OneToOneField property) symbol (bionty.Gene attribute) symlink_to() (lamindb.UPath method) sync_git_repo (lamindb.core.Settings property) sync_public_sources() (in module bionty.core) synchronize() (lamindb.UPath method) synonyms (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Feature attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) synonyms_mapper (lamindb.models.InspectResult property) system (wetlab.GeneticPerturbation attribute) system_check_deprecated_details (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute) system_check_removed_details (lamindb.base.fields.BigIntegerField attribute) (lamindb.base.fields.BinaryField attribute) (lamindb.base.fields.BooleanField attribute) (lamindb.base.fields.CharField attribute) (lamindb.base.fields.DateField attribute) (lamindb.base.fields.DateTimeField attribute) (lamindb.base.fields.DecimalField attribute) (lamindb.base.fields.DurationField attribute) (lamindb.base.fields.EmailField attribute) (lamindb.base.fields.FloatField attribute) (lamindb.base.fields.ForeignKey attribute) (lamindb.base.fields.GenericIPAddressField attribute) (lamindb.base.fields.IntegerField attribute) (lamindb.base.fields.JSONField attribute) (lamindb.base.fields.OneToOneField attribute) (lamindb.base.fields.PositiveIntegerField attribute) (lamindb.base.fields.PositiveSmallIntegerField attribute) (lamindb.base.fields.SlugField attribute) (lamindb.base.fields.SmallIntegerField attribute) (lamindb.base.fields.TextField attribute) (lamindb.base.fields.TimeField attribute) (lamindb.base.fields.URLField attribute) (lamindb.base.fields.UUIDField attribute)

T

target_field (lamindb.base.fields.ForeignKey property) (lamindb.base.fields.OneToOneField property) targets (wetlab.Biologic attribute) (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.GeneticPerturbation attribute) Techsample (class in wetlab) text (lamindb.Reference attribute) TextField (class in lamindb.base.fields) TiledbsomaExperimentCurator (class in lamindb.curators) TimeField (class in lamindb.base.fields) Tissue (class in bionty) (class in bionty.base) tissues (clinicore.Biosample attribute) (wetlab.Biosample attribute) title (clinicore.ClinicalTrial attribute) to_dict() (lamindb.core.storage.AnnDataAccessor method) to_memory() (lamindb.core.storage.AnnDataAccessor method) to_pronto() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) to_python() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method)

to_url() (lamindb.UPath method) touch() (lamindb.UPath method) track() (in module lamindb) (lamindb.core.Context method) track_run_inputs (lamindb.core.Settings attribute) tracked() (in module lamindb) TracksRun (class in lamindb.models) TracksUpdates (class in lamindb.models) transform Transform (class in lamindb) transform (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.Context property) (lamindb.Run attribute) transforms (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) TransformType (in module lamindb.base.types) Treatment (class in clinicore) type (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) type_is_cloud (lamindb.setup.core.StorageSettings property)

U

UI uid (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Sheet attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ULabel (class in lamindb) ulabels (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) union() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) uniprotkb_id (bionty.CellMarker attribute) (bionty.Protein attribute) unit (lamindb.Feature attribute) (wetlab.EnvironmentalPerturbation attribute) unlink() (lamindb.UPath method) UPath (class in lamindb) UPathStr (in module lamindb.base.types) update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) update_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) UpdateContext updated_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Sheet attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute)

upload_from() (lamindb.UPath method) url (bionty.Source attribute) (lamindb.Project attribute) (lamindb.Reference attribute) URLField (class in lamindb.base.fields) use_in_migrations (lamindb.models.QueryManager attribute) User (class in lamindb) user (lamindb.setup.core.SetupSettings property) UserSettings (class in lamindb.setup.core) using() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Sheet class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) UUIDField (class in lamindb.base.fields)

V

valid_features() (in module lamindb.examples.schemas) VALID_SUFFIXES (class in lamindb.core.storage) validate() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) (lamindb.curators.AnnDataCurator method) (lamindb.curators.core.CatVector method) (lamindb.curators.core.Curator method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.curators.core.SlotsCurator method) (lamindb.curators.DataFrameCurator method) (lamindb.curators.MuDataCurator method) (lamindb.curators.SpatialDataCurator method) (lamindb.curators.TiledbsomaExperimentCurator method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate class method) (lamindb.models.QuerySet method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) validated (lamindb.models.InspectResult property) validated_artifacts (lamindb.Schema attribute) ValidateFields (class in lamindb.models) ValidationError value (lamindb.models.FeatureValue attribute) (wetlab.EnvironmentalPerturbation attribute) value_from_object() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method)

value_to_string() (lamindb.base.fields.BigIntegerField method) (lamindb.base.fields.BinaryField method) (lamindb.base.fields.BooleanField method) (lamindb.base.fields.CharField method) (lamindb.base.fields.DateField method) (lamindb.base.fields.DateTimeField method) (lamindb.base.fields.DecimalField method) (lamindb.base.fields.DurationField method) (lamindb.base.fields.EmailField method) (lamindb.base.fields.FloatField method) (lamindb.base.fields.ForeignKey method) (lamindb.base.fields.GenericIPAddressField method) (lamindb.base.fields.IntegerField method) (lamindb.base.fields.JSONField method) (lamindb.base.fields.OneToOneField method) (lamindb.base.fields.PositiveIntegerField method) (lamindb.base.fields.PositiveSmallIntegerField method) (lamindb.base.fields.SlugField method) (lamindb.base.fields.SmallIntegerField method) (lamindb.base.fields.TextField method) (lamindb.base.fields.TimeField method) (lamindb.base.fields.URLField method) (lamindb.base.fields.UUIDField method) values (lamindb.curators.core.CatVector property) (lamindb.Feature attribute) values() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) values_artifact (lamindb.Record attribute) values_json (lamindb.Record attribute) values_list() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) values_project (lamindb.Record attribute) values_record (lamindb.Record attribute) values_run (lamindb.Record attribute) values_ulabel (lamindb.Record attribute) var_names (lamindb.core.storage.AnnDataAccessor property) variable verbosity (lamindb.core.Settings property) version (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) (bionty.Source attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Transform attribute) versions (lamindb.Artifact property) (lamindb.Collection property) (lamindb.models.IsVersioned property) (lamindb.Transform property) view() (in module lamindb) view_children() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.models.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) view_lineage() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Transform method) view_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.models.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) view_tree() (lamindb.UPath method)

W

walk() (lamindb.UPath method) Well (class in wetlab) wetlab module with_config() (lamindb.Feature method)

with_name() (lamindb.UPath method) with_segments() (lamindb.UPath method) with_stem() (lamindb.UPath method) with_suffix() (lamindb.UPath method) write_bytes() (lamindb.UPath method) write_text() (lamindb.UPath method)